I just tested this on my Syntakt and here is how I got it to work with my Novation Summit and Filter Frequency (CC pair 29, 61).
On the AMP/CC Select page: set SEL1 to 29 and SEL2 to 61 (the CC pair)
On the FLTR/CC Value page: enable VAL1, which will control the value (VAL2 has no effect)
So this doesn’t give any finer-grained resolution using the pair, but it totally works!